Uniprot api update

[Jevs242]

I changed the url format in StringBuilder htmlQueryString and increased the client wait time because some xml files were taking too long and that was causing an error.

[codecov[bot]]

Codecov Report

Merging #2260 (5140d9e) into master (fa1473b) will increase coverage by 0.00%. The diff coverage is 100.00%.

:exclamation: Current head 5140d9e differs from pull request most recent head dfa7606. Consider uploading reports for the commit dfa7606 to get more accurate results

@@           Coverage Diff           @@
##           master    #2260   +/-   ##
=======================================
  Coverage   91.43%   91.43%           
=======================================
  Files         134      134           
  Lines       20158    20162    +4     
  Branches     2807     2809    +2     
=======================================
+ Hits        18432    18436    +4     
  Misses       1237     1237           
  Partials      489      489           

Impacted Files	Coverage Δ
...ions/Databases/DownloadUniProtDatabaseFunctions.cs	100.00% <100.00%> (ø)

... and 267 files with indirect coverage changes

[Jevs242]

I think there may be a better way to use the HttpClient than what we implemented in the past. It would be nice to have a progress bar, a way to cancel the download, and a guarantee that the UI doesn't lock up during the download

The top answer in this stack overflow question looks like it could be a better way to do it.

I did a research about how to make a progress bar and I need the information in contentLength to know how many is the dowload size but the uniprot page when I download any proteome the ContentLength gives me null.

[trishorts]

Instead of a progress bar, maybe we can just report total bytes downloaded and update that frequently so the user knows there is some action.

private void startDownload()
{
    Thread thread = new Thread(() => {
          WebClient client = new WebClient();
          client.DownloadProgressChanged += new DownloadProgressChangedEventHandler(client_DownloadProgressChanged);
          client.DownloadFileCompleted += new AsyncCompletedEventHandler(client_DownloadFileCompleted);
          client.DownloadFileAsync(new Uri("http://joshua-ferrara.com/luahelper/lua.syn"), @"C:\LUAHelper\Syntax Files\lua.syn");
    });
    thread.Start();
}
void client_DownloadProgressChanged(object sender, DownloadProgressChangedEventArgs e)
{
    this.BeginInvoke((MethodInvoker) delegate {
        double bytesIn = double.Parse(e.BytesReceived.ToString());
        double totalBytes = double.Parse(e.TotalBytesToReceive.ToString());
        double percentage = bytesIn / totalBytes * 100;
        label2.Text = "Downloaded " + e.BytesReceived + " of " + e.TotalBytesToReceive;
        progressBar1.Value = int.Parse(Math.Truncate(percentage).ToString());
    });
}
void client_DownloadFileCompleted(object sender, AsyncCompletedEventArgs e)
{
    this.BeginInvoke((MethodInvoker) delegate {
         label2.Text = "Completed";
    }); 
}

[trishorts]

maybe a cancel button too?