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smith-chem-wisc / MetaMorpheus

Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
MIT License
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Glycopeptide label free quantification LFQ #2309

Closed trishorts closed 8 months ago

trishorts commented 10 months ago

This PR enables label free quantification with match between runs for glycopeptides withing the Glyco Search Task

codecov[bot] commented 9 months ago

Codecov Report

Merging #2309 (0f2556a) into master (ca0094d) will increase coverage by 0.17%. The diff coverage is 94.25%.

Additional details and impacted files [![Impacted file tree graph](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2309/graphs/tree.svg?width=650&height=150&src=pr&token=m0HXyK8tFy&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc)](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2309?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc) ```diff @@ Coverage Diff @@ ## master #2309 +/- ## ========================================== + Coverage 92.50% 92.67% +0.17% ========================================== Files 135 135 Lines 20688 20982 +294 Branches 2842 2880 +38 ========================================== + Hits 19137 19445 +308 + Misses 1074 1063 -11 + Partials 477 474 -3 ``` | [Files](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2309?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc) | Coverage Δ | | |---|---|---| | [...TaskLayer/GlycoSearchTask/GlycoSearchParameters.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2309?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL1Rhc2tMYXllci9HbHljb1NlYXJjaFRhc2svR2x5Y29TZWFyY2hQYXJhbWV0ZXJzLmNz) | `100.00% <100.00%> (ø)` | | | [...pheus/TaskLayer/GlycoSearchTask/GlycoSearchTask.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2309?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL1Rhc2tMYXllci9HbHljb1NlYXJjaFRhc2svR2x5Y29TZWFyY2hUYXNrLmNz) | `97.59% <100.00%> (+1.93%)` | :arrow_up: | | [...ycoSearchTask/PostGlycoSearchAnalysisParameters.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2309?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL1Rhc2tMYXllci9HbHljb1NlYXJjaFRhc2svUG9zdEdseWNvU2VhcmNoQW5hbHlzaXNQYXJhbWV0ZXJzLmNz) | `100.00% <100.00%> (ø)` | | | [MetaMorpheus/TaskLayer/SearchTask/SearchTask.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2309?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL1Rhc2tMYXllci9TZWFyY2hUYXNrL1NlYXJjaFRhc2suY3M=) | `94.75% <ø> (ø)` | | | [...pheus/EngineLayer/ProteinParsimony/ProteinGroup.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2309?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL0VuZ2luZUxheWVyL1Byb3RlaW5QYXJzaW1vbnkvUHJvdGVpbkdyb3VwLmNz) | `95.05% <92.59%> (+0.76%)` | :arrow_up: | | [...yer/GlycoSearchTask/PostGlycoSearchAnalysisTask.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2309?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL1Rhc2tMYXllci9HbHljb1NlYXJjaFRhc2svUG9zdEdseWNvU2VhcmNoQW5hbHlzaXNUYXNrLmNz) | `95.17% <94.37%> (+1.97%)` | :arrow_up: | ... and [3 files with indirect coverage changes](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2309/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc)