Specify contaminants database via command line

smith-chem-wisc / MetaMorpheus

Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities

MIT License

90 stars 45 forks source link

Specify contaminants database via command line #2335

Closed mgraeff closed 5 months ago

mgraeff commented 5 months ago

Is there a way to specify a contaminants database using the command line executable? I might just not be able to figure it out, but if there isn't could you implement it? Since it is already a feature in the Windows GUI I imagine it to be straight forward?