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smith-chem-wisc / MetaMorpheus

Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
MIT License
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use mzlib LibrarySpectrum class #2349

Closed trishorts closed 4 months ago

trishorts commented 4 months ago

mzLib has a LibrarySpectrum class. Therefore, we eliminate the redundant LibrarySpectrum class from MetaMorpheus.

codecov[bot] commented 4 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (e1a30d7) 92.65% compared to head (18cf0ba) 92.64%.

Additional details and impacted files [![Impacted file tree graph](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2349/graphs/tree.svg?width=650&height=150&src=pr&token=m0HXyK8tFy&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc)](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2349?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc) ```diff @@ Coverage Diff @@ ## master #2349 +/- ## ========================================== - Coverage 92.65% 92.64% -0.02% ========================================== Files 137 136 -1 Lines 21274 21211 -63 Branches 2928 2923 -5 ========================================== - Hits 19712 19650 -62 Misses 1083 1083 + Partials 479 478 -1 ``` | [Files](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2349?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc) | Coverage Δ | | |---|---|---| | [MetaMorpheus/EngineLayer/PsmTsv/PsmFromTsv.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2349?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL0VuZ2luZUxheWVyL1BzbVRzdi9Qc21Gcm9tVHN2LmNz) | `96.84% <ø> (ø)` | | | [.../SpectralLibrarySearch/CrosslinkLibrarySpectrum.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2349?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL0VuZ2luZUxheWVyL1NwZWN0cmFsTGlicmFyeVNlYXJjaC9Dcm9zc2xpbmtMaWJyYXJ5U3BlY3RydW0uY3M=) | `94.38% <100.00%> (ø)` | | | [...gineLayer/SpectralLibrarySearch/SpectralLibrary.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2349?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL0VuZ2luZUxheWVyL1NwZWN0cmFsTGlicmFyeVNlYXJjaC9TcGVjdHJhbExpYnJhcnkuY3M=) | `87.14% <ø> (ø)` | | | [...tralLibrarySearch/SpectralLibrarySearchFunction.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2349?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL0VuZ2luZUxheWVyL1NwZWN0cmFsTGlicmFyeVNlYXJjaC9TcGVjdHJhbExpYnJhcnlTZWFyY2hGdW5jdGlvbi5jcw==) | `98.76% <ø> (ø)` | | | [...etaMorpheus/GuiFunctions/MetaDraw/MetaDrawLogic.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2349?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL0d1aUZ1bmN0aW9ucy9NZXRhRHJhdy9NZXRhRHJhd0xvZ2ljLmNz) | `95.74% <ø> (ø)` | | | [...taDraw/SpectrumMatch/CrosslinkSpectrumMatchPlot.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2349?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL0d1aUZ1bmN0aW9ucy9NZXRhRHJhdy9TcGVjdHJ1bU1hdGNoL0Nyb3NzbGlua1NwZWN0cnVtTWF0Y2hQbG90LmNz) | `96.10% <ø> (ø)` | | | [...MetaDraw/SpectrumMatch/PeptideSpectrumMatchPlot.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2349?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL0d1aUZ1bmN0aW9ucy9NZXRhRHJhdy9TcGVjdHJ1bU1hdGNoL1BlcHRpZGVTcGVjdHJ1bU1hdGNoUGxvdC5jcw==) | `97.40% <ø> (ø)` | | | [...ctions/MetaDraw/SpectrumMatch/SpectrumMatchPlot.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2349?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL0d1aUZ1bmN0aW9ucy9NZXRhRHJhdy9TcGVjdHJ1bU1hdGNoL1NwZWN0cnVtTWF0Y2hQbG90LmNz) | `95.20% <ø> (ø)` | | | [MetaMorpheus/TaskLayer/MetaMorpheusTask.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2349?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL1Rhc2tMYXllci9NZXRhTW9ycGhldXNUYXNrLmNz) | `88.57% <ø> (ø)` | | | [...eus/TaskLayer/SearchTask/PostSearchAnalysisTask.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2349?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL1Rhc2tMYXllci9TZWFyY2hUYXNrL1Bvc3RTZWFyY2hBbmFseXNpc1Rhc2suY3M=) | `93.36% <ø> (ø)` | | | ... and [1 more](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2349?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc) | |