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smith-chem-wisc / MetaMorpheus

Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
MIT License
90 stars 45 forks source link

Glyco spectrum library search updates #2351

Closed trishorts closed 4 months ago

trishorts commented 4 months ago

what the title says. This does not yet use the spectrum library in search and does not have the ability to update a spectrum library. that will be coming.

codecov[bot] commented 4 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 92.65%. Comparing base (79426aa) to head (d8adecc).

Additional details and impacted files [![Impacted file tree graph](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2351/graphs/tree.svg?width=650&height=150&src=pr&token=m0HXyK8tFy&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc)](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2351?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc) ```diff @@ Coverage Diff @@ ## master #2351 +/- ## ======================================= Coverage 92.64% 92.65% ======================================= Files 136 136 Lines 21232 21243 +11 Branches 2928 2930 +2 ======================================= + Hits 19671 19682 +11 Misses 1083 1083 Partials 478 478 ``` | [Files](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2351?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc) | Coverage Δ | | |---|---|---| | [...TaskLayer/GlycoSearchTask/GlycoSearchParameters.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2351?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL1Rhc2tMYXllci9HbHljb1NlYXJjaFRhc2svR2x5Y29TZWFyY2hQYXJhbWV0ZXJzLmNz) | `100.00% <100.00%> (ø)` | | | [...yer/GlycoSearchTask/PostGlycoSearchAnalysisTask.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2351?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL1Rhc2tMYXllci9HbHljb1NlYXJjaFRhc2svUG9zdEdseWNvU2VhcmNoQW5hbHlzaXNUYXNrLmNz) | `94.37% <100.00%> (+0.13%)` | :arrow_up: | | [MetaMorpheus/TaskLayer/MetaMorpheusTask.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2351?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL1Rhc2tMYXllci9NZXRhTW9ycGhldXNUYXNrLmNz) | `88.59% <ø> (ø)` | | | [...eus/TaskLayer/SearchTask/PostSearchAnalysisTask.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2351?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL1Rhc2tMYXllci9TZWFyY2hUYXNrL1Bvc3RTZWFyY2hBbmFseXNpc1Rhc2suY3M=) | `93.36% <100.00%> (ø)` | | | [...TaskLayer/XLSearchTask/PostXLSearchAnalysisTask.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2351?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL1Rhc2tMYXllci9YTFNlYXJjaFRhc2svUG9zdFhMU2VhcmNoQW5hbHlzaXNUYXNrLmNz) | `79.56% <100.00%> (ø)` | |