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smith-chem-wisc / MetaMorpheus

Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
MIT License
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Glyco Results.txt does not have a summary at the top :( #2368

Open nbollis opened 1 month ago

nbollis commented 1 month ago

Describing the issue Here is an example from a classic search task. The All target XXX is what Jenkins looks for

All target PSMs with q-value = 0.01: 7784 All target proteoforms with q-value = 0.01 : 1865 All target protein groups with q-value = 0.01 (1% FDR): 148

MS2 spectra in 02-17-20_jurkat_td_rep2_fract4-calib: 2923 Precursors fragmented in 02-17-20_jurkat_td_rep2_fract4-calib: 68167 02-17-20_jurkat_td_rep2_fract4-calib target PSMs with q-value = 0.01: 4228

MS2 spectra in 02-18-20_jurkat_td_rep2_fract5-calib: 2455 Precursors fragmented in 02-18-20_jurkat_td_rep2_fract5-calib: 60533 02-18-20_jurkat_td_rep2_fract5-calib target PSMs with q-value = 0.01: 3556

Target protein groups within 1 % FDR in 02-17-20_jurkat_td_rep2_fract4-calib: 108 Target protein groups within 1 % FDR in 02-18-20_jurkat_td_rep2_fract5-calib: 130 02-17-20_jurkat_td_rep2_fract4-calib Target proteoforms with q-value = 0.01 : 1266

02-18-20_jurkat_td_rep2_fract5-calib Target proteoforms with q-value = 0.01 : 1150