smith-chem-wisc / MetaMorpheus

Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
MIT License
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Peptide Quant Output #2406

Open CEBoos opened 3 months ago

CEBoos commented 3 months ago

Can we incorporate similar outputs from all quantified protein groups into all quantified peptides results for filtering downstream? Such as peptide q-value, contaminant vs target peptide, mod information