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smith-chem-wisc / MetaMorpheus

Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
MIT License
90 stars 46 forks source link

Speed up index creation in modern search #412

Open trishorts opened 7 years ago

trishorts commented 7 years ago

get it below 30s

rmillikin commented 7 years ago

it would be nice to write the index to the MetaMorpheus folder rather than the data folder, with the database's name and perhaps a revision date as an identifier, so that the user does not have to remake the index every time they want to run a modern search

stefanks commented 7 years ago

That is exactly how the index files are being written right now...

On Tue, Jun 20, 2017 at 9:35 AM, rmillikin notifications@github.com wrote:

it would be nice to write the index to the MetaMorpheus folder rather than the data folder, with the database's name and perhaps a revision date as an identifier, so that the user does not have to remake the index every time they want to run a modern search

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rmillikin commented 7 years ago

I thought it wrote to a subfolder in the data folder currently?

stefanks commented 7 years ago

No, it writes the index file in the same folder as the database, with folder name being the date/time of creation. Slightly off-topic, please create a new issue if this output file location is a problem!