smith-chem-wisc / MetaNetwork

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Power selection updates #7

Closed avcarr2 closed 3 years ago

avcarr2 commented 3 years ago

Three major changes to server.R: 1) gives ß a default power of 12, which is sufficient to get decent WGCNA results for 20 to 30 samples if there are no batch effects. 2) Adds Automatic Power Selection, which will use the minimum power that achieves scale-free topology, calculated by WGCNA::PickSoftThreshold 3) Adds an option to manually select the power.