Closed acesnik closed 4 years ago
We can also just hard code in the URLs for non-model organisms as users need them, too. That's much easier.
This is important for collaboration with Olivier with non-human primates. The impact of the work is much higher if we can look for variants in any organism.
Solved with @bintiibrahim's contribution of the various Ensembl genomes
Take in the snpEff.config information regarding genomes and gene sets as a dictionary (e.g. key: GRCh38.81, value: tuple with genome fasta URL and GTF gene set URL)