Implement Mutect2 in the variant calling pipeline for calling somatic and germline mutations

smith-chem-wisc / Spritz

Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data

https://smith-chem-wisc.github.io/Spritz/

MIT License

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Open acesnik opened 5 years ago

acesnik commented 5 years ago

Mutect2 calling
From a combined VCF file with two genotypes {tumor, normal}, annotate the variants with SnpEff, and output a protein XML with those variations
Adapt Proteomics.VariantApplication in mzLib to handle generating separate protein entries for the different samples. It's built with multiple-sample VCF lines in mind...

zrolfs commented 5 years ago

I know about 50% of these words

acesnik commented 5 years ago