spritz/snakemake GUI

[bintiibrahim]

first version for the GUI with snakemake. features:

• user can input sra
• user can input fastq files
• can only execute one workflow task at a time, can be cleared/reset
• all other options are hardcoded n snakemake: GATK and GRCh38

some things to know for the user:

• if any, fastq files must be located in user defined analysis directory
• others folders generated by snakemake e.g.data and SnpEff are located in user's current directory (in Debug mode this would be /Spritz/GUI/bin/Debug)
• user must have Powershell and docker installed

some things to know for us:

• docker is currently pulling an image from rinaibrhm/spritz docker hub
• image has to be rebuilt and pushed to docker hub for any edits/changes to snakemake rules/scripts/etc

i didn't really touch all the code for the toolkit wrappers but i don't think we need it anymore. anyway, i feel like this still needs testing on your end. :)

[acesnik]

Could you remove the commented out code and drop the whole GUI project into SpritzSnake?

[acesnik]

Wait, that's right that you're pulling down the docker image! I'll give it a try here.