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smith-chem-wisc / Spritz

Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data
https://smith-chem-wisc.github.io/Spritz/
MIT License
7 stars 11 forks source link

clean up the C# code #165

Closed acesnik closed 4 years ago

acesnik commented 4 years ago

I think this is working... I'm not sure why the GUI is building into the main directory instead of into the bin. I got the docker instance to download, but I'm not sure it ran just yet.

acesnik commented 4 years ago

@bintiibrahim I moved your genome resources into the GUI project to be able to build into the bin instead of the main directory. I also deleted the bulk of my old C# code.

It seems to run the Powershell commands properly, but it's not running any of the snakemake scripts.

acesnik commented 4 years ago

Let's also make a Docker Hub repository for the master branch here instead of in your fork. Hopefully, it works.

bintiibrahim commented 4 years ago

@bintiibrahim I moved your genome resources into the GUI project to be able to build into the bin instead of the main directory. I also deleted the bulk of my old C# code.

It seems to run the Powershell commands properly, but it's not running any of the snakemake scripts.

Oh - I think I know what's wrong. The latest version of the Dockerfile wasn't pushed into rinaibrhm/species when I made the PR. I'll do that soon. Once we have that it should run well.

acesnik commented 4 years ago

Okay, could you make a small pull request into bigcleanup with just the Dockerfile?

acesnik commented 4 years ago

I think everything is working now, except for the old Docker container. I'm going to merge.