search

smith-chem-wisc / Spritz

Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data
https://smith-chem-wisc.github.io/Spritz/
MIT License
7 stars 11 forks source link

fixed some bugs when merged conflicts #168

Closed bintiibrahim closed 4 years ago

acesnik commented 4 years ago

How is this coming along, @bintiibrahim? :)

bintiibrahim commented 4 years ago

How is this coming along, @bintiibrahim? :)

hey! sorry i haven't been working on spritz much this break. since i'm away, i haven't been able to test run workflows on my laptop (i don't have docker). from where i left off, i've pushed the latest spritz version to smithlab/spritz but the test runs weren't going smoothly. i did run a workflow just before i left after resolving most bugs but i didn't get a chance to see how that turned out.

i am a bit concerned about the robustness of using docker to run the workflow (it's not smooth). do you think i should invest time in developing a python GUI instead?

i'll be back next tuesday!