Fix SnpEff build in Docker container

smith-chem-wisc / Spritz

Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data

https://smith-chem-wisc.github.io/Spritz/

MIT License

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Fix SnpEff build in Docker container #172

Closed acesnik closed 4 years ago

acesnik commented 4 years ago

Running the docker container without options works. Running the snakemake command in start.sh within the docker container works But the command run by the GUI leads to the SnpEff build to fail.

acesnik commented 4 years ago

Could also be solved and sped up by pre-building SnpEff and posting the binaries here. https://github.com/smith-chem-wisc/SnpEff/releases

acesnik commented 4 years ago

Implemented in speedup branch.