Closed acesnik closed 3 years ago
This PR improves the download speed of FASTQs from GEO SRA using aspera to perform the download, rather than fasterq-dump.
aspera
fasterq-dump
This also improves the setup for offline usage by downloading the ptmlist and PSI-MOD.
Also enforces usage of a recent gzip, since some servers have outdated versions.
gzip
This PR improves the download speed of FASTQs from GEO SRA using
aspera
to perform the download, rather thanfasterq-dump
.This also improves the setup for offline usage by downloading the ptmlist and PSI-MOD.