Closed acesnik closed 3 years ago
fasterq-dump
fusion
biopython
snakemake --use-conda
-SO coordinate
MarkDuplicates
fasterq-dump
fusion
workflow, since it's not integrated and I don't have plans to do so in the near futurebiopython
referencesnakemake --use-conda
to be more efficient if a subset of workflows is selected-SO coordinate
from AddReadGroups in variant workflow because it looks like that triggers a followup sortMarkDuplicates
because it runs close to the RAM limit