Using Arabidopsis sequences for tests instead of yeast

smith-chem-wisc / Spritz

Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data

https://smith-chem-wisc.github.io/Spritz/

MIT License

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Using Arabidopsis sequences for tests instead of yeast #224

Open acesnik opened 2 years ago

acesnik commented 2 years ago

Arabidopsis has a small genome, but it might have some more examples of splicing variation that would allow the pipeline to run through for the isoform analysis. Would need to put it in the genome list first.

acesnik commented 2 years ago

http://plants.ensembl.org/Arabidopsis_thaliana/Info/Index