search

smith-chem-wisc / Spritz

Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data
https://smith-chem-wisc.github.io/Spritz/
MIT License
7 stars 11 forks source link

Can we figure out the unknown start/stop codons for putative transcripts from proteomics data? #5

Open acesnik opened 6 years ago

acesnik commented 6 years ago

https://www.biostars.org/p/120617/#121342

acesnik commented 6 years ago

pasted image at 2017_10_23 07_44 pm

acesnik commented 5 years ago

I think this might be possible with ORF finding... see the LongOrf tool here https://github.com/TransDecoder/TransDecoder/wiki the docker is here if you want to test it easily https://hub.docker.com/r/comics/transdecoder/