Update Omics to reflect upcoming changes in MetaMorpheus

[nbollis]

Library spectrum and PsmFromTsv have been moved from MetaMorpheus to Mzlib.

The files have not yet been deleted in MetaMorpheus.

This pull request prepares the PsmReader to pass all tests in MetaMorpheus.

[codecov[bot]]

Codecov Report

Attention: Patch coverage is 81.75182% with 25 lines in your changes missing coverage. Please review.

Project coverage is 76.46%. Comparing base (6c18e9f) to head (6ecd93d).

Files with missing lines	Patch %	Lines
...ib/Omics/SpectrumMatch/CrosslinkLibrarySpectrum.cs	82.50%	11 Missing and 3 partials :warning:
mzLib/Proteomics/PSM/PsmFromTsv.cs	80.43%	7 Missing and 2 partials :warning:
mzLib/Omics/SpectrumMatch/SpectrumMatchFromTsv.cs	50.00%	1 Missing and 1 partial :warning:

Additional details and impacted files

[](https://app.codecov.io/gh/smith-chem-wisc/mzLib/pull/807?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc) ```diff @@ Coverage Diff @@ ## master #807 +/- ## ========================================== - Coverage 76.48% 76.46% -0.03% ========================================== Files 211 212 +1 Lines 31960 32080 +120 Branches 3286 3298 +12 ========================================== + Hits 24446 24531 +85 - Misses 6954 6984 +30 - Partials 560 565 +5 ``` | [Files with missing lines](https://app.codecov.io/gh/smith-chem-wisc/mzLib/pull/807?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc) | Coverage Δ | | |---|---|---| | [mzLib/Omics/SpectrumMatch/LibrarySpectrum.cs](https://app.codecov.io/gh/smith-chem-wisc/mzLib/pull/807?src=pr&el=tree&filepath=mzLib%2FOmics%2FSpectrumMatch%2FLibrarySpectrum.cs&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-bXpMaWIvT21pY3MvU3BlY3RydW1NYXRjaC9MaWJyYXJ5U3BlY3RydW0uY3M=) | `93.22% <ø> (ø)` | | | [...ib/Readers/SearchResults/SpectrumMatchTsvReader.cs](https://app.codecov.io/gh/smith-chem-wisc/mzLib/pull/807?src=pr&el=tree&filepath=mzLib%2FReaders%2FSearchResults%2FSpectrumMatchTsvReader.cs&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-bXpMaWIvUmVhZGVycy9TZWFyY2hSZXN1bHRzL1NwZWN0cnVtTWF0Y2hUc3ZSZWFkZXIuY3M=) | `97.45% <100.00%> (+1.65%)` | :arrow_up: | | [mzLib/Readers/Util/SupportedFileTypes.cs](https://app.codecov.io/gh/smith-chem-wisc/mzLib/pull/807?src=pr&el=tree&filepath=mzLib%2FReaders%2FUtil%2FSupportedFileTypes.cs&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-bXpMaWIvUmVhZGVycy9VdGlsL1N1cHBvcnRlZEZpbGVUeXBlcy5jcw==) | `97.59% <100.00%> (+0.09%)` | :arrow_up: | | [mzLib/Omics/SpectrumMatch/SpectrumMatchFromTsv.cs](https://app.codecov.io/gh/smith-chem-wisc/mzLib/pull/807?src=pr&el=tree&filepath=mzLib%2FOmics%2FSpectrumMatch%2FSpectrumMatchFromTsv.cs&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-bXpMaWIvT21pY3MvU3BlY3RydW1NYXRjaC9TcGVjdHJ1bU1hdGNoRnJvbVRzdi5jcw==) | `92.45% <50.00%> (-4.90%)` | :arrow_down: | | [mzLib/Proteomics/PSM/PsmFromTsv.cs](https://app.codecov.io/gh/smith-chem-wisc/mzLib/pull/807?src=pr&el=tree&filepath=mzLib%2FProteomics%2FPSM%2FPsmFromTsv.cs&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-bXpMaWIvUHJvdGVvbWljcy9QU00vUHNtRnJvbVRzdi5jcw==) | `89.16% <80.43%> (-2.96%)` | :arrow_down: | | [...ib/Omics/SpectrumMatch/CrosslinkLibrarySpectrum.cs](https://app.codecov.io/gh/smith-chem-wisc/mzLib/pull/807?src=pr&el=tree&filepath=mzLib%2FOmics%2FSpectrumMatch%2FCrosslinkLibrarySpectrum.cs&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-bXpMaWIvT21pY3MvU3BlY3RydW1NYXRjaC9Dcm9zc2xpbmtMaWJyYXJ5U3BlY3RydW0uY3M=) | `82.50% <82.50%> (ø)` | |