smith-chem-wisc mzLib issues

smith-chem-wisc / mzLib

Library for mass spectrometry projects

GNU Lesser General Public License v3.0

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issues

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FlashLFQ isotope pattern stuff

#506 rmillikin closed 5 years ago
0
Remove Silac protein accession

#505 zrolfs closed 5 years ago
0
Change top3 protein quant to peptide-based from peak-based

#504 zrolfs closed 5 years ago
0
Change protein quant to use peptides instead of peaks

#503 zrolfs closed 5 years ago
1
correct PEP calculation in Bayesian quant

#502 rmillikin closed 5 years ago
0
dynamic mzml/mgf connection

#501 rmillikin closed 4 years ago
1
replace unrecognized amino acid characters in protein databases with 'X'

#500 rmillikin closed 5 years ago
1
Make centroid property of spectrum and not scan

#499 trishorts opened 5 years ago
2
non-static thermo dynamic connection

#498 rmillikin closed 5 years ago
0
Set Native ID

#497 lonelu closed 5 years ago
0
Set One Based Scan Number

#496 lonelu closed 5 years ago
2
Allow Silac Label Mixtures

#495 zrolfs closed 5 years ago
2
FlashLFQ uses Bayesian protein quant

#494 rmillikin closed 5 years ago
3
bayesian estimation of mean/stddev

#493 rmillikin closed 5 years ago
0
delete stuff

#492 rmillikin closed 5 years ago
0
Added CrossesVariant field to MatchedFragmentIon.

#491 cullanm closed 5 years ago
0
FlashLFQ now uses RawFileReader instead of MSFileReader

#490 rmillikin closed 5 years ago
1
fix RawFileReader precursor scan problem

#489 rmillikin closed 5 years ago
0
box car merging

#488 NicoleFrey4 closed 2 years ago
0
Fix SNES min pep length bug

#487 zrolfs closed 5 years ago
1
Fix for naming of variant containing proteins

#486 rmmiller22 closed 5 years ago
0
190521 more digestion bugs send help

#485 zrolfs closed 5 years ago
0
190521 more digestion bugs send help

#484 zrolfs closed 5 years ago
0
Generate all the proteolytic products as distinct proteins during XML reading and delete the ProteolysisProducts parameter

#483 zrolfs opened 5 years ago
0
Fix proteolysis product digestion (remove redundancy, save full length products)

#482 zrolfs closed 5 years ago
2
Specific searches within non-specific searches: Adhere to specified missed cleavages

#481 zrolfs closed 5 years ago
0
Reduce redundancy in terminal mods for speedy non-specific searches

#480 zrolfs closed 5 years ago
0
Fix bug with OneBasedVariantModifications

#479 rmmiller22 closed 5 years ago
2
Filter peptides contain N-glycan motif in Protein.digestion

#478 lonelu closed 3 years ago
2
Fix get cleavage specificity when deserializing

#477 zrolfs closed 5 years ago
3
GTPMD variant decoy crash (again)

#476 acesnik closed 2 years ago
2
MBR update +bugfixes

#475 rmillikin closed 5 years ago
1
Fix generation of decoys from stop gain variant proteins

#474 acesnik closed 5 years ago
0
Fix protein accession

#473 zrolfs closed 5 years ago
0
fix crash when parsing digestion params from peptides with no SILAC info

#472 rmillikin closed 5 years ago
0
Fix Isoform reading bug for FASTA and XML

#471 rmmiller22 closed 5 years ago
0
change normalization

#470 trishorts closed 5 years ago
0
xcorr fix

#469 trishorts closed 5 years ago
0
The number of target peptides is not the same as the number of decoy peptides

#468 zrolfs opened 5 years ago
0
unit test to keep most intense peaks after filtering

#467 trishorts closed 5 years ago
0
support for <referenceableParamGroup> / SCIEX WIFF converter

#466 ftwkoopmans opened 5 years ago
2
deal with NaN peaks in xcorr

#465 trishorts closed 5 years ago
0
new xcorr range

#464 trishorts closed 5 years ago
0
changed multi window normaliztion to maintain spectrum tic

#463 trishorts closed 5 years ago
0
change window peak normaliztion to bool

#462 trishorts closed 5 years ago
0
Allow Multiple Silac Mods Per Replicate

#461 zrolfs closed 5 years ago
0
fix a little error in allowed window range for filtering

#460 trishorts closed 5 years ago
0
multipurpose spectrum filtering

#459 trishorts closed 5 years ago
0
change window count to window width in filtering

#458 trishorts closed 5 years ago
0
Allow accession modification of proteins for SILAC in constructor

#457 zrolfs closed 5 years ago
0

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