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smithlabcode / dnmtools

Tools for analyzing DNA methylation data
https://dnmtools.readthedocs.io
GNU General Public License v3.0
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roi should check for input files before reporting any problems with arguments #154

Open andrewdavidsmith opened 1 year ago

andrewdavidsmith commented 1 year ago

Describe the bug The roi command will report problems with arguments, but likely should report on the existence of input files first. This is more immediate as some problems with arguments might depend on characteristics of the input files.

To Reproduce Steps to reproduce the behavior:

  1. Run dnmtools roi with a non-existent input file.

Expected behavior The user should be informed that the file does not exist.

Screenshots NA

Desktop (please complete the following information):

Additional context Happens in v1.4.0