smithlabcode / dnmtools

Tools for analyzing DNA methylation data
https://dnmtools.readthedocs.io
GNU General Public License v3.0
25 stars 8 forks source link

Adding cpgbins command #231

Closed andrewdavidsmith closed 2 months ago

andrewdavidsmith commented 2 months ago

Adding the cpgbins command to generate the same format as the roi command but with the input being xcounts format and assuming CpG sites. This should be faster than using roi on an input file of bins