smithlabcode / dnmtools

Tools for analyzing DNA methylation data
https://dnmtools.readthedocs.io
GNU General Public License v3.0
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roi accepts xsym input #235

Closed andrewdavidsmith closed 3 months ago

andrewdavidsmith commented 3 months ago

Adding the code for the roi command to accept xsym format input. This requires sequentially loading all the sites, and a completely separate branch from the other input format options. It also requires testing the input formt to determine if it is xsym, and the branch for xsym takes priority. This behavior should be updated so that the user specifies to prevent any unexpected behavior