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smithlabcode / falco

A C++ drop-in replacement of FastQC to assess the quality of sequence read data
https://falco.readthedocs.io
GNU General Public License v3.0
90 stars 10 forks source link

Force file format not work #20

Closed y9c closed 2 years ago

y9c commented 2 years ago

I have a fastq.gz file, but the suffix is not fq.gz. The I added the -f fastq.gz arg, but falco still exit with error,

Cannot recognize file format for file

guilhermesena1 commented 2 years ago

Hello,

Thank you so much for reporting this problem and apologies on the delay on getting back to you. I was able to reproduce the problem on my end and you're absolutely right that forced file formats were not being handled properly. I pushed a fix for this at fae34c6 . If you are using a clone of the repo this should solve the problem, please let us know otherwise!

y9c commented 2 years ago

Works now. Thanks!