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smithlabcode / methpipe

A pipeline for analyzing DNA methylation data from bisulfite sequencing.
http://smithlabresearch.org/methpipe
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Where is headers within libsmithlab_cpp-1.0.2? #151

Closed aganve closed 3 years ago

aganve commented 4 years ago

Hello,

I am at this step of installing methpipe $ ../configure --prefix=/some/reasonable/place \ CPPFLAGS='-I /path/to/smithlab_cpp/headers' \ LDFLAGS='-L/path/to/smithlab_cpp/lib'

but do not see a directory where the smithlab_cpp headers can be found. I see lib but no headers

Therefore, I get the following error:

Failed to locate smithlab_cpp on your system. Please use the LDFLAGS and CPPFLAGS variables to specify the directories where the smithlab_cpp library and headers can be found.

Help would be appreciated.

guilhermesena1 commented 4 years ago

Hi aganve,

thank you for the message, this definitely does seem like an improvement for readme is necessary. Compiling smithlab_cpp should not generate a headers directory, and if you install it to some outside directory, the cpps and hpps should be inside the include directory. Does replacing headers with include in your configure command work successfully?