andrewdavidsmith
commented
3 years ago Worked fine for me with g++-10 installed through apt and selected with ./configure CXX=g++-10 --disable-silent-rules after which all the output showed that it was using g++-10 to compile, and no difference in the output compared with other versions of gcc. Please include more details. Below is the uname for the machine and the bottom lines of the compile output (which appear because of the --disable-silent-rules to ./configure):
g++-10 -std=c++11 -DHAVE_CONFIG_H -I. -I ./src/common -I ./src/smithlab_cpp -O3 -MT src/mlml/mlml.o -MD -MP -MF $depbase.Tpo -c -o src/mlml/mlml.o src/mlml/mlml.cpp &&\
mv -f $depbase.Tpo $depbase.Po
rm -f libmethpipe.a
ar cru libmethpipe.a src/common/BetaBin.o src/common/Distro.o src/common/EmissionDistribution.o src/common/Epiread.o src/common/EpireadStats.o src/common/LevelsCounter.o src/common/MethpipeSite.o src/common/Smoothing.o src/common/ThreeStateHMM.o src/common/TwoStateHMM.o src/common/TwoStateHMM_PMD.o src/common/bsutils.o src/common/numerical_utils.o
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libmethpipe.a
g++-10 -std=c++11 -O3 -o pmd src/analysis/pmd.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o methcounts src/analysis/methcounts.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o bsrate src/analysis/bsrate.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o hmr src/analysis/hmr.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o hypermr src/analysis/hypermr.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o levels src/analysis/levels.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o roimethstat src/analysis/roimethstat.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o methstates src/analysis/methstates.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o methentropy src/analysis/methentropy.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o hmr_rep src/analysis/hmr_rep.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o multimethstat src/analysis/multimethstat.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o lc_approx src/utils/lc_approx.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o fast-liftover src/utils/fast-liftover.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o lift-filter src/utils/lift-filter.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o merge-bsrate src/utils/merge-bsrate.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o merge-methcounts src/utils/merge-methcounts.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o duplicate-remover src/utils/duplicate-remover.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o symmetric-cpgs src/utils/symmetric-cpgs.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o clean-hairpins src/utils/clean-hairpins.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o selectsites src/utils/selectsites.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o guessprotocol src/utils/guessprotocol.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o allelicmeth src/amrfinder/allelicmeth.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o amrfinder src/amrfinder/amrfinder.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o amrtester src/amrfinder/amrtester.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o methdiff src/radmeth/methdiff.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o dmr src/radmeth/dmr.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o radmeth src/radmeth/radmeth.o src/radmeth/regression.o src/radmeth/combine_pvals.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz
g++-10 -std=c++11 -O3 -o mlml src/mlml/mlml.o libmethpipe.a libsmithlab_cpp.a -lgsl -lgslcblas -lz 
hchetia
Compilation of the package failed with gcc 10.