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smithlabcode / methpipe

A pipeline for analyzing DNA methylation data from bisulfite sequencing.
http://smithlabresearch.org/methpipe
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methstates doesn't read FASTA files with multiple chromosomes #212

Closed guilhermesena1 closed 2 years ago

guilhermesena1 commented 2 years ago

when methstates takes a FASTA file as the -c argument, instead of a directory, it only reads the first chromosome.

guilhermesena1 commented 2 years ago

Fixed at 2e137ee . Tested the same FASTA file with all chroms in the same file and a directory of chroms and the outputs are identical.