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smithlabcode / methpipe

A pipeline for analyzing DNA methylation data from bisulfite sequencing.
http://smithlabresearch.org/methpipe
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Reading files of methylation levels #216

Closed andrewdavidsmith closed 2 years ago

andrewdavidsmith commented 2 years ago

Several programs still use their own reading functions, which makes it difficult to maintain. The operator>> in the MSite struct (declared in MethpipeSite.hpp) has existed for a long time, and all these should be converted.

andrewdavidsmith commented 2 years ago

Fixed at some point.