search

smorabit / hdWGCNA

High dimensional weighted gene co-expression network analysis
https://smorabit.github.io/hdWGCNA/
Other
316 stars 31 forks source link

TestSoftPowers get: Error in if (nGenes < 3) { : Argument is of length zero #170

Closed Roger-GOAT closed 5 months ago

Roger-GOAT commented 6 months ago 
library(hdWGCNA)
library(WGCNA)
enableWGCNAThreads(nThreads = 0.75*parallel::detectCores()) 
Idents(sce) <- 'cluster'
DefaultAssay(sce) <- 'RNA'
sce <- SCTransform(sce,assay = 'RNA')
sce <- RunPCA(sce,assay = 'SCT')

seurat_obj <- SetupForWGCNA(
  sce,
  gene_select = "fraction"
  wgcna_name = "tutorial"
)

DefaultAssay(seurat_obj) <- 'RNA'
Idents(seurat_obj) <- 'cluster'
seurat_obj <- MetacellsByGroups(
  seurat_obj = sce,
wgcna_name = "tutorial",
  group.by = c("cluster",'batch')
  ident.group = "cluster",
  assay = 'RNA' 
  )

seurat_obj <- NormalizeMetacells(seurat_obj = seurat_obj,wgcna_name = "tutorial")

##Test different soft powers:-----------------
bicor <- WGCNA::bicor
networkType <- "signed hybrid"
corFnc <-  "bicor"
seurat_obj <- TestSoftPowers(
  seurat_obj, corFnc = corFnc,
  networkType = networkType # you can also use "unsigned" or "signed hybrid"
)
Error in if (nGenes < 3) { : Argument is of length zero

I run this in R 4.2 is OK but update to R 4.3.1 get error. Some package must be conflicted. Do any one know why? Best!

Roger-GOAT commented 6 months ago
> session_info() ─ Session info ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────── setting value version R version 4.3.1 (2023-06-16) os Ubuntu 22.04.1 LTS system x86_64, linux-gnu ui RStudio language (EN) collate zh_CN.UTF-8 ctype zh_CN.UTF-8 tz Asia/Shanghai date 2023-11-05 rstudio 2023.09.1+494 Desert Sunflower (server) pandoc 3.1.1 @ /usr/lib/rstudio-server/bin/quarto/bin/tools/ (via rmarkdown) ─ Packages ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── package * version date (UTC) lib source abind 1.4-5 2016-07-21 [2] CRAN (R 4.2.1) annotate 1.78.0 2023-04-25 [1] Bioconductor AnnotationDbi * 1.62.2 2023-07-02 [1] Bioconductor ape 5.7-1 2023-03-13 [1] CRAN (R 4.3.1) aplot 0.2.2 2023-10-06 [1] CRAN (R 4.3.1) arrow 13.0.0.1 2023-09-22 [1] CRAN (R 4.3.1) assertthat 0.2.1 2019-03-21 [2] CRAN (R 4.2.1) AUCell 1.22.0 2023-04-25 [1] Bioconductor backports 1.4.1 2021-12-13 [3] CRAN (R 4.1.2) base64enc 0.1-3 2015-07-28 [2] CRAN (R 4.2.1) beeswarm 0.4.0 2021-06-01 [1] CRAN (R 4.3.1) Biobase * 2.60.0 2023-04-25 [1] Bioconductor BiocGenerics * 0.46.0 2023-04-25 [1] Bioconductor BiocManager 1.30.22 2023-08-08 [1] CRAN (R 4.3.1) BiocNeighbors 1.18.0 2023-04-25 [1] Bioconductor BiocParallel 1.34.2 2023-05-22 [1] Bioconductor Biostrings 2.68.1 2023-05-16 [1] Bioconductor bit 4.0.5 2022-11-15 [1] CRAN (R 4.3.1) bit64 4.0.5 2020-08-30 [2] CRAN (R 4.2.1) bitops 1.0-7 2021-04-24 [2] CRAN (R 4.2.1) blob 1.2.4 2023-03-17 [1] CRAN (R 4.3.1) broom 1.0.5 2023-06-09 [1] CRAN (R 4.3.1) cachem 1.0.8 2023-05-01 [1] CRAN (R 4.3.1) Cairo 1.6-1 2023-08-18 [1] CRAN (R 4.3.1) callr 3.7.3 2022-11-02 [1] CRAN (R 4.3.1) car 3.1-2 2023-03-30 [1] CRAN (R 4.3.1) carData 3.0-5 2022-01-06 [1] CRAN (R 4.3.1) caTools 1.18.2 2021-03-28 [2] CRAN (R 4.2.1) cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.3.1) checkmate 2.2.0 2023-04-27 [1] CRAN (R 4.3.1) circlize 0.4.15 2022-05-10 [1] CRAN (R 4.3.1) cli 3.6.1 2023-03-23 [1] CRAN (R 4.3.1) clue 0.3-65 2023-09-23 [1] CRAN (R 4.3.1) cluster 2.1.4 2022-08-22 [4] CRAN (R 4.2.1) clusterProfiler * 4.8.3 2023-08-31 [1] Bioconductor codetools 0.2-19 2023-02-01 [1] CRAN (R 4.3.1) colorspace * 2.1-0 2023-01-23 [1] CRAN (R 4.3.1) ComplexHeatmap 2.16.0 2023-04-25 [1] Bioconductor COSG * 0.9.0 2023-10-31 [1] Github (genecell/COSGR@c8f3f53) cowplot 1.1.1 2020-12-30 [2] CRAN (R 4.2.1) crayon 1.5.2 2022-09-29 [1] CRAN (R 4.3.1) data.table * 1.14.8 2023-02-17 [1] CRAN (R 4.3.1) DBI 1.1.3 2022-06-18 [1] CRAN (R 4.3.1) DelayedArray 0.26.7 2023-07-28 [1] Bioconductor DelayedMatrixStats 1.22.6 2023-08-28 [1] Bioconductor deldir 1.0-9 2023-05-17 [1] CRAN (R 4.3.1) devtools * 2.4.5 2022-10-11 [1] CRAN (R 4.3.1) digest 0.6.33 2023-07-07 [1] CRAN (R 4.3.1) doParallel 1.0.17 2022-02-07 [1] CRAN (R 4.3.1) DOSE 3.26.2 2023-10-09 [1] Bioconductor downloader 0.4 2015-07-09 [2] CRAN (R 4.2.1) dplyr * 1.1.3 2023-09-03 [1] CRAN (R 4.3.1) DT 0.30 2023-10-05 [1] CRAN (R 4.3.1) dynamicTreeCut * 1.63-1 2016-03-11 [1] CRAN (R 4.3.1) ellipsis 0.3.2 2021-04-29 [2] CRAN (R 4.2.1) enrichplot 1.20.3 2023-09-15 [1] Bioconductor evaluate 0.22 2023-09-29 [1] CRAN (R 4.3.1) fansi 1.0.5 2023-10-08 [1] CRAN (R 4.3.1) farver 2.1.1 2022-07-06 [1] CRAN (R 4.3.1) fastcluster * 1.2.3 2021-05-24 [1] CRAN (R 4.3.1) fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.3.1) fastmatch 1.1-4 2023-08-18 [1] CRAN (R 4.3.1) fgsea 1.26.0 2023-04-25 [1] Bioconductor fitdistrplus 1.1-11 2023-04-25 [1] CRAN (R 4.3.1) FNN 1.1.3.2 2023-03-20 [1] CRAN (R 4.3.1) forcats * 1.0.0 2023-01-29 [1] CRAN (R 4.3.1) foreach 1.5.2 2022-02-02 [3] CRAN (R 4.1.2) foreign 0.8-85 2023-09-09 [1] CRAN (R 4.3.1) Formula 1.2-5 2023-02-24 [1] CRAN (R 4.3.1) fs 1.6.3 2023-07-20 [1] CRAN (R 4.3.1) future * 1.33.0 2023-07-01 [1] CRAN (R 4.3.1) future.apply 1.11.0 2023-05-21 [1] CRAN (R 4.3.1) generics 0.1.3 2022-07-05 [1] CRAN (R 4.3.1) GenomeInfoDb 1.36.4 2023-10-02 [1] Bioconductor GenomeInfoDbData 1.2.10 2023-10-18 [1] Bioconductor GenomicRanges 1.52.1 2023-10-08 [1] Bioconductor GetoptLong 1.0.5 2020-12-15 [1] CRAN (R 4.3.1) ggbeeswarm 0.7.2 2023-04-29 [1] CRAN (R 4.3.1) ggdendro 0.1.23 2022-02-16 [1] CRAN (R 4.3.1) ggforce 0.4.1 2022-10-04 [1] CRAN (R 4.3.1) ggfun 0.1.3 2023-09-15 [1] CRAN (R 4.3.1) ggplot2 * 3.4.4 2023-10-12 [1] CRAN (R 4.3.1) ggplotify 0.1.2 2023-08-09 [1] CRAN (R 4.3.1) ggprism 1.0.4 2022-11-04 [1] CRAN (R 4.3.1) ggpubr 0.6.0 2023-02-10 [1] CRAN (R 4.3.1) ggraph 2.1.0 2022-10-09 [1] CRAN (R 4.3.1) ggrastr 1.0.2 2023-06-01 [1] CRAN (R 4.3.1) ggrepel 0.9.4 2023-10-13 [1] CRAN (R 4.3.1) ggridges 0.5.4 2022-09-26 [2] CRAN (R 4.2.1) ggsci 3.0.0 2023-03-08 [1] CRAN (R 4.3.1) ggsignif 0.6.4 2022-10-13 [1] CRAN (R 4.3.1) ggtree 3.8.2 2023-07-24 [1] Bioconductor ggvenn * 0.1.10 2023-03-31 [1] CRAN (R 4.3.1) ggVennDiagram * 1.2.3 2023-08-14 [1] CRAN (R 4.3.1) GlobalOptions 0.1.2 2020-06-10 [1] CRAN (R 4.3.1) globals 0.16.2 2022-11-21 [1] CRAN (R 4.3.1) glue 1.6.2 2022-02-24 [1] CRAN (R 4.3.1) GO.db 3.17.0 2023-10-18 [1] Bioconductor goftest 1.2-3 2021-10-07 [2] CRAN (R 4.2.1) GOSemSim 2.26.1 2023-07-10 [1] Bioconductor gplots 3.1.3 2022-04-25 [1] CRAN (R 4.3.1) graph 1.78.0 2023-04-25 [1] Bioconductor graphlayouts 1.0.1 2023-09-19 [1] CRAN (R 4.3.1) gridBase 0.4-7 2014-02-24 [1] CRAN (R 4.3.1) gridExtra 2.3 2017-09-09 [2] CRAN (R 4.2.1) gridGraphics 0.5-1 2020-12-13 [2] CRAN (R 4.2.1) GSEABase 1.62.0 2023-04-25 [1] Bioconductor gson 0.1.0 2023-03-07 [1] CRAN (R 4.3.1) gtable 0.3.4 2023-08-21 [1] CRAN (R 4.3.1) gtools 3.9.4 2022-11-27 [1] CRAN (R 4.3.1) harmony * 1.0.3 2023-09-30 [1] CRAN (R 4.3.1) hdf5r 1.3.8 2023-01-21 [1] CRAN (R 4.3.1) HDO.db 0.99.1 2023-10-18 [1] Bioconductor hdWGCNA * 0.2.24 2023-10-22 [1] local (/home/dengzhen/Downloads/package/hdWGCNA-dev.zip) Hmisc 5.1-1 2023-09-12 [1] CRAN (R 4.3.1) hms 1.1.3 2023-03-21 [1] CRAN (R 4.3.1) htmlTable 2.4.1 2022-07-07 [1] CRAN (R 4.3.1) htmltools 0.5.6.1 2023-10-06 [1] CRAN (R 4.3.1) htmlwidgets 1.6.2 2023-03-17 [1] CRAN (R 4.3.1) httpuv 1.6.11 2023-05-11 [1] CRAN (R 4.3.1) httr 1.4.7 2023-08-15 [1] CRAN (R 4.3.1) ica 1.0-3 2022-07-08 [2] CRAN (R 4.2.1) igraph 1.5.1 2023-08-10 [1] CRAN (R 4.3.1) impute 1.74.1 2023-05-02 [1] Bioconductor IRanges * 2.34.1 2023-06-22 [1] Bioconductor irlba 2.3.5.1 2022-10-03 [2] CRAN (R 4.2.1) iterators 1.0.14 2022-02-05 [3] CRAN (R 4.1.2) janitor 2.2.0 2023-02-02 [1] CRAN (R 4.3.1) jsonlite 1.8.7 2023-06-29 [1] CRAN (R 4.3.1) KEGGREST 1.40.1 2023-09-29 [1] Bioconductor KernSmooth 2.23-22 2023-07-10 [1] CRAN (R 4.3.1) knitr 1.44 2023-09-11 [1] CRAN (R 4.3.1) ks 1.14.1 2023-08-10 [1] CRAN (R 4.3.1) labeling 0.4.3 2023-08-29 [1] CRAN (R 4.3.1) later 1.3.1 2023-05-02 [1] CRAN (R 4.3.1) lattice 0.21-9 2023-10-01 [1] CRAN (R 4.3.1) lazyeval 0.2.2 2019-03-15 [2] CRAN (R 4.2.1) leiden 0.4.3 2022-09-10 [2] CRAN (R 4.2.1) lifecycle 1.0.3 2022-10-07 [1] CRAN (R 4.3.1) limma 3.56.2 2023-06-04 [1] Bioconductor listenv 0.9.0 2022-12-16 [1] CRAN (R 4.3.1) lmtest 0.9-40 2022-03-21 [2] CRAN (R 4.2.1) lubridate * 1.9.3 2023-09-27 [1] CRAN (R 4.3.1) magick 2.8.1 2023-10-22 [1] CRAN (R 4.3.1) magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.3.1) MASS 7.3-60 2023-05-04 [1] CRAN (R 4.3.1) Matrix 1.6-1.1 2023-09-18 [1] CRAN (R 4.3.1) MatrixGenerics 1.12.3 2023-07-30 [1] Bioconductor matrixStats 1.0.0 2023-06-02 [1] CRAN (R 4.3.1) mclust 6.0.0 2022-10-31 [1] CRAN (R 4.3.1) memoise 2.0.1 2021-11-26 [2] CRAN (R 4.2.1) mime 0.12 2021-09-28 [2] CRAN (R 4.2.1) miniUI 0.1.1.1 2018-05-18 [2] CRAN (R 4.2.1) munsell 0.5.0 2018-06-12 [2] CRAN (R 4.2.1) mvtnorm 1.2-3 2023-08-25 [1] CRAN (R 4.3.1) Nebulosa 1.10.0 2023-04-25 [1] Bioconductor nlme 3.1-163 2023-08-09 [1] CRAN (R 4.3.1) NMF 0.26 2023-03-20 [1] CRAN (R 4.3.1) nnet 7.3-19 2023-05-03 [1] CRAN (R 4.3.1) org.Mm.eg.db * 3.17.0 2023-10-28 [1] Bioconductor paletteer 1.5.0 2022-10-19 [1] CRAN (R 4.3.1) parallelly 1.36.0 2023-05-26 [1] CRAN (R 4.3.1) patchwork * 1.1.3 2023-08-14 [1] CRAN (R 4.3.1) pbapply 1.7-2 2023-06-27 [1] CRAN (R 4.3.1) pheatmap * 1.0.12 2019-01-04 [1] CRAN (R 4.3.1) pillar 1.9.0 2023-03-22 [1] CRAN (R 4.3.1) pkgbuild 1.4.2 2023-06-26 [1] CRAN (R 4.3.1) pkgconfig 2.0.3 2019-09-22 [2] CRAN (R 4.2.1) pkgload 1.3.3 2023-09-22 [1] CRAN (R 4.3.1) plotly 4.10.2 2023-06-03 [1] CRAN (R 4.3.1) plyr 1.8.9 2023-10-02 [1] CRAN (R 4.3.1) png 0.1-8 2022-11-29 [1] CRAN (R 4.3.1) polyclip 1.10-6 2023-09-27 [1] CRAN (R 4.3.1) pracma 2.4.2 2022-09-22 [1] CRAN (R 4.3.1) preprocessCore 1.62.1 2023-05-02 [1] Bioconductor prettyunits 1.2.0 2023-09-24 [1] CRAN (R 4.3.1) processx 3.8.2 2023-06-30 [1] CRAN (R 4.3.1) profvis 0.3.8 2023-05-02 [1] CRAN (R 4.3.1) progressr 0.14.0 2023-08-10 [1] CRAN (R 4.3.1) promises 1.2.1 2023-08-10 [1] CRAN (R 4.3.1) proxyC 0.3.4 2023-10-25 [1] CRAN (R 4.3.1) ps 1.7.5 2023-04-18 [1] CRAN (R 4.3.1) purrr * 1.0.2 2023-08-10 [1] CRAN (R 4.3.1) qvalue 2.32.0 2023-04-25 [1] Bioconductor R.methodsS3 1.8.2 2022-06-13 [2] CRAN (R 4.2.1) R.oo 1.25.0 2022-06-12 [2] CRAN (R 4.2.1) R.utils 2.12.2 2022-11-11 [1] CRAN (R 4.3.1) R6 2.5.1 2021-08-19 [2] CRAN (R 4.2.1) RANN 2.6.1 2019-01-08 [2] CRAN (R 4.2.1) RcisTarget * 1.20.0 2023-04-25 [1] Bioconductor RColorBrewer 1.1-3 2022-04-03 [1] CRAN (R 4.3.1) Rcpp * 1.0.11 2023-07-06 [1] CRAN (R 4.3.1) RcppAnnoy 0.0.21 2023-07-02 [1] CRAN (R 4.3.1) RcppParallel 5.1.7 2023-02-27 [1] CRAN (R 4.3.1) RCurl 1.98-1.12 2023-03-27 [1] CRAN (R 4.3.1) readr * 2.1.4 2023-02-10 [1] CRAN (R 4.3.1) readxl 1.4.3 2023-07-06 [1] CRAN (R 4.3.1) registry 0.5-1 2019-03-05 [1] CRAN (R 4.3.1) rematch2 2.1.2 2020-05-01 [3] CRAN (R 4.0.1) remotes 2.4.2.1 2023-07-18 [1] CRAN (R 4.3.1) reshape2 1.4.4 2020-04-09 [2] CRAN (R 4.2.1) reticulate 1.34.0 2023-10-12 [1] CRAN (R 4.3.1) rjson 0.2.21 2022-01-09 [1] CRAN (R 4.3.1) rlang 1.1.1 2023-04-28 [1] CRAN (R 4.3.1) rmarkdown 2.25 2023-09-18 [1] CRAN (R 4.3.1) rngtools 1.5.2 2021-09-20 [1] CRAN (R 4.3.1) ROCR 1.0-11 2020-05-02 [2] CRAN (R 4.2.1) rpart 4.1.21 2023-10-09 [1] CRAN (R 4.3.1) RSQLite 2.3.1 2023-04-03 [1] CRAN (R 4.3.1) rstatix 0.7.2 2023-02-01 [1] CRAN (R 4.3.1) rstudioapi 0.15.0 2023-07-07 [1] CRAN (R 4.3.1) Rtsne 0.16 2022-04-17 [2] CRAN (R 4.2.1) RVenn 1.1.0 2019-07-18 [1] CRAN (R 4.3.1) S4Arrays 1.0.6 2023-08-30 [1] Bioconductor S4Vectors * 0.38.2 2023-09-22 [1] Bioconductor scales 1.2.1 2022-08-20 [1] CRAN (R 4.3.1) scattermore 1.2 2023-06-12 [1] CRAN (R 4.3.1) scatterpie 0.2.1 2023-06-07 [1] CRAN (R 4.3.1) scCustomize * 1.1.3 2023-07-19 [1] CRAN (R 4.3.1) SCENIC * 1.3.1 2023-10-19 [1] local (/home/dengzhen/Downloads/package/SCENIC-master) SCopeLoomR * 0.13.0 2023-10-18 [1] Github (aertslab/SCopeLoomR@20f4e0a) scRNAtoolVis * 0.0.7 2023-11-01 [1] Github (junjunlab/scRNAtoolVis@54e7a9c) sctransform * 0.4.0 2023-09-19 [1] CRAN (R 4.3.1) sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.3.1) Seurat * 4.4.0 2023-09-28 [1] CRAN (R 4.3.1) SeuratObject * 4.1.4 2023-09-26 [1] CRAN (R 4.3.1) shadowtext 0.1.2 2022-04-22 [2] CRAN (R 4.2.1) shape 1.4.6 2021-05-19 [1] CRAN (R 4.3.1) shiny 1.7.5.1 2023-10-14 [1] CRAN (R 4.3.1) SingleCellExperiment 1.22.0 2023-04-25 [1] Bioconductor snakecase 0.11.1 2023-08-27 [1] CRAN (R 4.3.1) sp 2.1-1 2023-10-16 [1] CRAN (R 4.3.1) sparseMatrixStats 1.12.2 2023-07-02 [1] Bioconductor spatstat.data 3.0-1 2023-03-12 [1] CRAN (R 4.3.1) spatstat.explore 3.2-3 2023-09-07 [1] CRAN (R 4.3.1) spatstat.geom 3.2-5 2023-09-05 [1] CRAN (R 4.3.1) spatstat.random 3.1-6 2023-09-09 [1] CRAN (R 4.3.1) spatstat.sparse 3.0-2 2023-06-25 [1] CRAN (R 4.3.1) spatstat.utils 3.0-3 2023-05-09 [1] CRAN (R 4.3.1) stringi 1.7.12 2023-01-11 [1] CRAN (R 4.3.1) stringr * 1.5.0 2022-12-02 [1] CRAN (R 4.3.1) SummarizedExperiment 1.30.2 2023-06-06 [1] Bioconductor survival 3.5-7 2023-08-14 [1] CRAN (R 4.3.1) tensor 1.5 2012-05-05 [2] CRAN (R 4.2.1) tester 0.1.7 2013-11-14 [1] CRAN (R 4.3.1) tibble * 3.2.1 2023-03-20 [1] CRAN (R 4.3.1) tidygraph 1.2.3 2023-02-01 [1] CRAN (R 4.3.1) tidyr * 1.3.0 2023-01-24 [1] CRAN (R 4.3.1) tidyselect 1.2.0 2022-10-10 [1] CRAN (R 4.3.1) tidytree 0.4.5 2023-08-10 [1] CRAN (R 4.3.1) tidyverse * 2.0.0 2023-02-22 [1] CRAN (R 4.3.1) timechange 0.2.0 2023-01-11 [1] CRAN (R 4.3.1) treeio 1.24.3 2023-07-24 [1] Bioconductor tweenr 2.0.2 2022-09-06 [2] CRAN (R 4.2.1) tzdb 0.4.0 2023-05-12 [1] CRAN (R 4.3.1) UCell * 2.4.0 2023-04-25 [1] Bioconductor urlchecker 1.0.1 2021-11-30 [1] CRAN (R 4.3.1) usethis * 2.2.2 2023-07-06 [1] CRAN (R 4.3.1) utf8 1.2.3 2023-01-31 [1] CRAN (R 4.3.1) uwot 0.1.16 2023-06-29 [1] CRAN (R 4.3.1) vctrs 0.6.4 2023-10-12 [1] CRAN (R 4.3.1) vipor 0.4.5 2017-03-22 [1] CRAN (R 4.3.1) viridis * 0.6.4 2023-07-22 [1] CRAN (R 4.3.1) viridisLite * 0.4.2 2023-05-02 [1] CRAN (R 4.3.1) WGCNA * 1.72-1 2023-01-18 [1] CRAN (R 4.3.1) withr 2.5.1 2023-09-26 [1] CRAN (R 4.3.1) xfun 0.40 2023-08-09 [1] CRAN (R 4.3.1) XML 3.99-0.14 2023-03-19 [1] CRAN (R 4.3.1) xtable 1.8-4 2019-04-21 [2] CRAN (R 4.2.1) XVector 0.40.0 2023-04-25 [1] Bioconductor yulab.utils 0.1.0 2023-09-20 [1] CRAN (R 4.3.1) zlibbioc 1.46.0 2023-04-25 [1] Bioconductor zoo 1.8-12 2023-04-13 [1] CRAN (R 4.3.1) [1] /home/dengzhen/R/x86_64-pc-linux-gnu-library/4.3 [2] /usr/local/lib/R/site-library [3] /usr/lib/R/site-library [4] /usr/lib/R/library ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── --   > | > >
smorabit commented 6 months ago

Hi, it looks like you have forgotten to run the SetDatExpr function. Please consult this tutorial to see the suggested steps for running hdWGCNA.