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smorabit / hdWGCNA

High dimensional weighted gene co-expression network analysis
https://smorabit.github.io/hdWGCNA/
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ModuleEigengenes exclude_grey not working #204

Closed iichelhadi closed 3 months ago

iichelhadi commented 4 months ago

When running 

data <- ModuleEigengenes(
  data,  exclude_grey = TRUE,
  group.by.vars = "study", max.iter.harmony = 50)

grey module still gets computed

smorabit commented 3 months ago

Hi,

Please ignore this parameter. I have removed it from the latest version because a lot of the other code in the hdWGCNA package started to throw errors if the grey module was missing.