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smorabit / hdWGCNA

High dimensional weighted gene co-expression network analysis
https://smorabit.github.io/hdWGCNA/
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Question about differential connectivity analysis #224

Closed DelongZHOU closed 2 months ago

DelongZHOU commented 2 months ago

Hi Sam, I believe another way to compare the modules across condition, in addition to the ME values, is to compare the connectivity, i.e. if the correlation between any pair of genes are stronger or weaker. Is there a way to do this in hdWGCNA? Thank you!

smorabit commented 2 months ago

hdWGCNA does not have a way to do this. You could just calculate the two different co-expression networks for each condition and then just compare the values as you see fit.

DelongZHOU commented 2 months ago

OK thank you!