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smorabit / hdWGCNA

High dimensional weighted gene co-expression network analysis
https://smorabit.github.io/hdWGCNA/
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Could not find function ConstructPseudobulk: has it been removed? #320

Closed ExctOcean closed 1 month ago

ExctOcean commented 1 month ago

ERROR When Running ConstructPseudobulk() I'm trying to use hdWGCNA on Psuedobulk for Co-expression network analysis.

When i tried to use ConstructPseudobulk, i got an ERROR image

I have confirmed that my package is updated to the latest version (hdWGCNA-0.300, which updated in 2024.2.28).

library(hdWGCNA)
> packageVersion('hdWGCNA')
[1] ‘0.4.0’
> ConstructPseudobulk(
+   seurat_obj,
+   group.by = 'cell_type',
+   replicate_col = 'DataSet',
+   assay = 'RNA',
+   slot = 'counts', # this should always be counts!
+   min_reps = 10
+ )
Error in ConstructPseudobulk(seurat_obj, group.by = "cell_type", replicate_col = "DataSet",  : 
  could not find function "ConstructPseudobulk"

why do I have this error? What could be the issue? image Has this function been removed in the latest version? If so, how can I replace this function?

smorabit commented 1 month ago

Somehow this function wasn't being properly exported. I just fixed it, so please re-install hdWGCNA and try it again. It worked for me when I tested it just now after re-installing.

ExctOcean commented 1 month ago

Somehow this function wasn't being properly exported. I just fixed it, so please re-install hdWGCNA and try it again. It worked for me when I tested it just now after re-installing.不知何故，这个函数没有被正确导出。我刚刚修复了它，所以请重新安装 hdWGCNA 并重试。当我重新安装后刚刚测试它时，它对我有用。

My problem has been resolved, thank you!