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smorabit / hdWGCNA

High dimensional weighted gene co-expression network analysis
https://smorabit.github.io/hdWGCNA/
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Nice work, could we input our own co-expression network to this method? Thanks. #83

Open HelloWorldLTY opened 1 year ago

HelloWorldLTY commented 1 year ago

I have a co-expression network generated by other techniques, could we use that network to perform analysis? Thanks.

smorabit commented 1 year ago

Hi, I am happy to try to help you use your own network with hdWGCNA. First, could you please provide all the relevant about your network and dataset, that would allow me better understand how to help you.

HelloWorldLTY commented 1 year ago

Hi, I have a co-expression network G and dataset D. I wonder if I can directly use the network G to perform hdWGCNA analysis. If you have simple solution, I think I can do it by myself. If this process is not easy to implement, I am glad to email the graph and dataset to you. Many thanks for your help!

smorabit commented 1 year ago

It's not clear what you mean when you say

I wonder if I can directly use the network G to perform hdWGCNA analysis

Can you clarify which analysis you want to run? In principle it should be possible to do some of the analysis with a custom network, it would definitely take me some time to figure it out but maybe it's worth writing a new tutorial about it.