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smouksassi / ggquickeda

ggplot2 and table1 summary statistics quick exploration of data
https://smouksassi.github.io/ggquickeda/
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Warning messages with geom_km and geom_kmticks and potentially other uses after ggplot2 3.4.0 #27

Open sebastian-gerdes opened 2 years ago

sebastian-gerdes commented 2 years ago

Dear all,

here a minimal example:

library('survival')
library('ggquickeda')
library('ggplot2')
ggplot(aml, aes(time = time, status = status, color = x)) + geom_km() + geom_kmticks()

The code spits out the following warnings on my system:

Warning messages: 1: The following aesthetics were dropped during statistical transformation: status ℹ This can happen when ggplot fails to infer the correct grouping structure in the data. ℹ Did you forget to specify a group aesthetic or to convert a numerical variable into a factor? 2: The following aesthetics were dropped during statistical transformation: status ℹ This can happen when ggplot fails to infer the correct grouping structure in the data. ℹ Did you forget to specify a group aesthetic or to convert a numerical variable into a factor? 3: Using the size aesthietic with geom_path was deprecated in ggplot2 3.4.0. ℹ Please use the linewidth aesthetic instead. This warning is displayed once every 8 hours. Call lifecycle::last_lifecycle_warnings() to see where this warning was generated.

The result is as it should be, however, something seems not right.

Thanks for any advice / improvements!

Best greetings, Sebastian

PS: Here my sessionInfo():

R version 4.2.1 (2022-06-23) Platform: aarch64-apple-darwin20 (64-bit) Running under: macOS Monterey 12.6.1

Matrix products: default LAPACK: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] ggplot2_3.4.0 ggquickeda_0.2.2 survival_3.4-0

loaded via a namespace (and not attached): [1] rstudioapi_0.14 magrittr_2.0.3 splines_4.2.1 tidyselect_1.2.0 munsell_0.5.0 colorspace_2.0-3 lattice_0.20-45 R6_2.5.1 rlang_1.0.6
[10] fansi_1.0.3 vipor_0.4.5 dplyr_1.0.10 tools_4.2.1 grid_4.2.1 beeswarm_0.4.0 ggbeeswarm_0.6.0 gtable_0.3.1 utf8_1.2.2
[19] DBI_1.1.3 cli_3.4.1 withr_2.5.0 assertthat_0.2.1 tibble_3.1.8 lifecycle_1.0.3 crayon_1.5.2 Matrix_1.5-1 farver_2.1.1
[28] vctrs_0.5.1 glue_1.6.2 labeling_0.4.2 compiler_4.2.1 pillar_1.8.1 generics_0.1.3 scales_1.2.1 pkgconfig_2.0.3

smouksassi commented 2 years ago

with the latest ggplot2 release I have many things to fix will keep this open for now