fix: update varlociraptor to 5.2.0, use `--pairhmm-mode homopolymer`

snakemake-workflows / cyrcular-calling

A Snakemake workflow for ecDNA detection in Nanopore or Illumina sequencing reads derived from DNA samples enriched for circular DNA.

https://snakemake.github.io/snakemake-workflow-catalog/?usage=snakemake-workflows/cyrcular-calling

MIT License

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fix: update varlociraptor to 5.2.0, use `--pairhmm-mode homopolymer` #1

Closed tedil closed 2 years ago

tedil commented 2 years ago

The workflow was using the in-development hphmm2 branch of varlociraptor which has since been merged (and deleted). This PR now uses an official varlociraptor release instead.