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snakemake-workflows / cyrcular-calling

A Snakemake workflow for ecDNA detection in Nanopore or Illumina sequencing reads derived from DNA samples enriched for circular DNA.
https://snakemake.github.io/snakemake-workflow-catalog/?usage=snakemake-workflows/cyrcular-calling
MIT License
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Optional params missing from config file #14

Open julia-luz opened 5 months ago

julia-luz commented 5 months ago

Hello!

I noticed some interesting options that appear in the rules (such as flavor and branch for the gene annotation) are missing from the config.yaml file, making it hard to set them if you don't know where to find them.

tedil commented 4 months ago

Oh, indeed! I will make those configurable in the config.yaml