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snakemake-workflows / cyrcular-calling

A Snakemake workflow for ecDNA detection in Nanopore or Illumina sequencing reads derived from DNA samples enriched for circular DNA.
https://snakemake.github.io/snakemake-workflow-catalog/?usage=snakemake-workflows/cyrcular-calling
MIT License
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Required layout for units.tsv and samples.tsv is unclear #15

Open julia-luz opened 5 months ago

julia-luz commented 5 months ago

Hello!

The required layout for those files as explained in the workflow catalog is a bit unclear, having example tables would be much appreciated. After a few failed attempts, I looked at your config files in the .test directory and used them as an example. However, in those files, you have group and sample_name simply set as "example" in a single row in both files.

Through that, it eventually became clear that havinggroup and sample_name be different from each other within my samples.tsv file was what caused my run to fail - setting them to be the same had it working.

I'm not sure if this is actually working as intended and it's just not clear from the documentation, or if I should be able to set those as differently from each other and this is a bug.

tedil commented 4 months ago

This might indeed be inconsistent, I will have a look.