Report FP / FN negative variants in single table

snakemake-workflows / dna-seq-benchmark

A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets

MIT License

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Report FP / FN negative variants in single table #77

Open famosab opened 5 months ago

famosab commented 5 months ago

To improve variant calling workflows, having a look at FP or FN called variants can be helpful. At the moment, these variants are reported in tables that are stratified. Having a step to unifiy these tables per callset would be nice.

famosab commented 1 week ago

Final rendering in report should be structured differently.

Is: genome then coverage
Should: benchmark then callset / pipeline