Use the new workflow.inputfile handling

snakemake-workflows / dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

MIT License

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Closed johanneskoester closed 4 years ago

johanneskoester commented 4 years ago

For transparent .fai reading in the cloud.

xref: snakemake/snakemake#35

johanneskoester commented 4 years ago

Before merging, this needs a new snakemake release.

johanneskoester commented 4 years ago

Not needed anymore, since fai is now generated in the pipeline itself.