A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
Instead of having to specify in the config.yaml, how much of the genome is covered, we automatically extract this from the covered regions that we already generate for focusing the variant calling steps.
Instead of having to specify in the config.yaml, how much of the genome is covered, we automatically extract this from the covered regions that we already generate for focusing the variant calling steps.