A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
This introduces two improvements for rending the datavzrd table.
First, dropping columns with low probabilities now works as indent.
Previously, this had little effect as column filtering was applied on the full callset instead of on the filtered ones.
Second, probability columns are now getting ordered descending by the sum of probabilities of each column.
This introduces two improvements for rending the datavzrd table.
First, dropping columns with low probabilities now works as indent. Previously, this had little effect as column filtering was applied on the full callset instead of on the filtered ones.
Second, probability columns are now getting ordered descending by the sum of probabilities of each column.