A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
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feat: Ordering gene oncoprint rows based on annotation label #170
As a new feature reordnering rows in the gene oncoprint based on annotation labels has been added.
Rows are sorted by their statistical dependence on the selected annotation label.
Ordering is determined by the Chi² test which was previously implemented in the dna-seq-benchmark pipline (see collect-fp-fn.py) and served as a template.
As a new feature reordnering rows in the gene oncoprint based on annotation labels has been added. Rows are sorted by their statistical dependence on the selected annotation label. Ordering is determined by the Chi² test which was previously implemented in the dna-seq-benchmark pipline (see collect-fp-fn.py) and served as a template.