A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
This PR fixes an issue where freebayes gets an empty bed-file of covered regions.
The issue occurs in case the passed target-regions file contains chromosomal positions where the chromosome is denoted with a chr-prefix.
This PR fixes an issue where freebayes gets an empty bed-file of covered regions. The issue occurs in case the passed target-regions file contains chromosomal positions where the chromosome is denoted with a
chr-prefix.