A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
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feat: Support new varlociraptor 8.0 observations #225
This adds support for varlociraptor 8.0 short observations and regular observation fields.
In case of short observations (SAOBS and SROBS) ref and alt alleles columns are being joined in order to be processable by datavzrd.
For the common OBS-field the edit distance is now being considered.
This adds support for varlociraptor 8.0 short observations and regular observation fields. In case of short observations (
SAOBSandSROBS) ref and alt alleles columns are being joined in order to be processable by datavzrd. For the commonOBS-field the edit distance is now being considered.