A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
MIT License
82
stars
38
forks
source link
fix: use annotated calls for unfiltered callsets #234
In case of callsets not having any filters vembrane table fails as the records of input bcf file have no annotation fields.
To fix this the input for fdr-control needs to be changed to the annotated bcf file.
In case of callsets not having any filters
vembrane tablefails as the records of input bcf file have no annotation fields. To fix this the input for fdr-control needs to be changed to the annotated bcf file.