A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
The current workflow is using snakemake-wrappers for loading VEP=108 while the config-file sets the reference to v105.
To avoid any issues annotating variants I suggest to update the config-file and the snakemake-wrappers to the latest version being v109.
The current workflow is using snakemake-wrappers for loading VEP=108 while the config-file sets the reference to v105. To avoid any issues annotating variants I suggest to update the config-file and the snakemake-wrappers to the latest version being v109.