A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
In the observation plots reference alleles are currently not being rendered as they the field has been renamed to Ref but is still called as Reference.
It also looks like high and low mapping qualities were accidentally swapped.
In the observation plots reference alleles are currently not being rendered as they the field has been renamed to
Refbut is still called asReference. It also looks like high and low mapping qualities were accidentally swapped.