A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
MIT License
81
stars
37
forks
source link
feat: Handle trimmed fastqs plus additional fixes #252
freebayes-parallel was failing. This has been fixed by updating to the latest snakemake wrapper
raw fastq files which already were trimmed on creation were not supported. Now, if no adapter is set in the units.tsv trimming with cutadapt will be skipped
gnomAD allele frequency column was added to the datavzrd report
These changes address multiple features/issues.
units.tsv
trimming with cutadapt will be skipped