feat: update envs and wrappers

snakemake-workflows / dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.

MIT License

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feat: update envs and wrappers #255

Closed FelixMoelder closed 11 months ago

dlaehnemann commented 11 months ago

I found another GitHub Action to free space from (hopefully) unused stuff. And I just went ahead to try it. Here's the docs: https://github.com/marketplace/actions/free-disk-space-ubuntu

dlaehnemann commented 11 months ago

So. this seems to run through, now. So I'd say this is ready for review.

One quick question from my side: Is it intentional that the test case on actual SRA data is only a dry-run? Is this to save time? See: https://github.com/snakemake-workflows/dna-seq-varlociraptor/blob/f112012b5485a2102dadf4690779f3bfd0ca1859/.github/workflows/main.yml#L132